PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30072.m000955
Common NameLOC8286506, RCOM_1321710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 240aa    MW: 26129.4 Da    PI: 6.5024
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30072.m000955genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.5e-39421431101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael 
  30072.m000955  42 PCGACKFLRRKCINGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELT 137
                    7***********************9989******************************************************************** PP

         DUF260  96 llkeel 101
                    +++++l
  30072.m000955 138 MVQTQL 143
                    999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.83841143IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3842140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAEPGRDASS DTRRKGIGKR SSVECQSVAE PAPQVTVAAA APCGACKFLR RKCINGCIFA  60
PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPVNRRHEAV VTISYEAQAR LSDPVYGCVS  120
TILALQQQVA SLQAELTMVQ TQLINSRFAM ANVLQNSQQQ QQQQQHIAML QPAYSNNSSA  180
STNLINMSSF TSNFDLVTDT APSSLSLDPI QLSRPSQEDE EDEEESQIPS IFADEILHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-38361535119LOB family transfactor Ramosa2.1
5ly0_B2e-38361535119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30072.m000955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525698.11e-177LOB domain-containing protein 20
SwissprotQ9SRV33e-82LBD20_ARATH; LOB domain-containing protein 20
TrEMBLB9SI791e-176B9SI79_RICCO; LOB domain-containing protein, putative
STRINGXP_002525698.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-66LOB domain-containing protein 20