PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30073.m002273
Common NameRCOM_1326820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 259aa    MW: 30008.2 Da    PI: 6.6669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30073.m002273genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.82.2e-32151334128
            NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    G  F+P++ elv++yL+kk++g + e+   i+e+++yk+ePwdL +   v+++e+ewyfF++      +g r++r+tk+g Wk t ++++v +  +
  30073.m002273  15 GDGFRPKEAELVNHYLNKKISGYDQEV-CRIPELNVYKLEPWDLIQhsGVNSNEQEWYFFHP------NGGRPSRTTKNGLWKDTCRTRKVRH-AE 102
                    667*********************999.56**************73347888999*****98......588**********************.99 PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    +++g+kkt+vf++g  +k ++t+W++ ey+ 
  30073.m002273 103 KQIGTKKTFVFHEGGPRKRVRTRWTIYEYST 133
                    99***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-389150IPR003441NAC domain
PROSITE profilePS5100535.51312151IPR003441NAC domain
PfamPF023658.0E-1915132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTSTPSLSES ARDVGDGFRP KEAELVNHYL NKKISGYDQE VCRIPELNVY KLEPWDLIQH  60
SGVNSNEQEW YFFHPNGGRP SRTTKNGLWK DTCRTRKVRH AEKQIGTKKT FVFHEGGPRK  120
RVRTRWTIYE YSTTFNLHNQ RAFVICKLFK NQNKKGTTPD CNEGELVHNM SIHDLEHQDH  180
NLKSNNPTFG EDETSQVMTC ENQATNIATS EEVDPQLLSN PGFFTGCNSQ YYSEDPAKYL  240
CMNGEQYFSN DDLWKFCDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2281549171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30073.m002273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520049.20.0NAC domain-containing protein 14 isoform X1
TrEMBLB9S2300.0B9S230_RICCO; Transcription factor, putative
STRINGXP_002520049.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2258533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-32NAC 014