PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30073.m002274
Common NameLOC8280485, RCOM_1326830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 256aa    MW: 29448.7 Da    PI: 4.4826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30073.m002274genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.62.3e-2771234128
            NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                    G+  +Ptd+el    L k   g + +    ++ +++y++ePw+Lp + vk++++ew   ++r+     g+r nr t++gyWk tg+++++++ ++e
  30073.m002274   7 GILHRPTDKELAYILLWKTFLGYDDPR---VPVLNLYDYEPWELPqHGVKTDDREWCIICPRQ-----GERGNRLTEEGYWKVTGNEHKIKD-GQE 93 
                    66779*******999999999999666...8999***********66899999********85.....6799*******************9.999 PP

            NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                    ++g+k++L+fy+gr+p+g+ t W mh+y++
  30073.m002274  94 EIGTKRILIFYRGRTPNGKLTGWKMHQYSA 123
                    ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.0644144IPR003441NAC domain
SuperFamilySSF1019413.53E-337143IPR003441NAC domain
PfamPF023651.1E-119122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTPPDGGILH RPTDKELAYI LLWKTFLGYD DPRVPVLNLY DYEPWELPQH GVKTDDREWC  60
IICPRQGERG NRLTEEGYWK VTGNEHKIKD GQEEIGTKRI LIFYRGRTPN GKLTGWKMHQ  120
YSAALNMFSP NQQGIFVLCK IIDKSNGSEG NMPNYYEDEL SSSMTVSGAY QIPTYSSFEY  180
GGISQSMNSE NKARDAATLQ QVDAELEPYL ETSNGWGEQN PSFHSASEWE MQAEQRLYNV  240
FIGDFQFLSE PETDQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19314918170NO APICAL MERISTEM PROTEIN
1ut4_B2e-19314918170NO APICAL MERISTEM PROTEIN
1ut7_A2e-19314918170NO APICAL MERISTEM PROTEIN
1ut7_B2e-19314918170NO APICAL MERISTEM PROTEIN
3swm_A2e-19314921173NAC domain-containing protein 19
3swm_B2e-19314921173NAC domain-containing protein 19
3swm_C2e-19314921173NAC domain-containing protein 19
3swm_D2e-19314921173NAC domain-containing protein 19
3swp_A2e-19314921173NAC domain-containing protein 19
3swp_B2e-19314921173NAC domain-containing protein 19
3swp_C2e-19314921173NAC domain-containing protein 19
3swp_D2e-19314921173NAC domain-containing protein 19
4dul_A2e-19314918170NAC domain-containing protein 19
4dul_B2e-19314918170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30073.m002274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520050.10.0NAC domain-containing protein 62
RefseqXP_025013258.10.0NAC domain-containing protein 62
TrEMBLB9S2310.0B9S231_RICCO; Transcription factor, putative
STRINGXP_002520050.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2782623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.23e-30NAC transcription factor-like 9