PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30073.m002276
Common NameRCOM_1326950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 84aa    MW: 9605.82 Da    PI: 5.7092
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30073.m002276genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.91.1e-26967260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
   HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                   Fl+k y++++d+++++++sws++ nsf+v++  ef+k++LpkyFkh+nf+SFvRQLn+Y
  30073.m002276  9 FLSKSYDMVDDPSTNSVVSWSSSDNSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTY 67
                   9********************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-27367IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-21581IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.29E-23767IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-22967IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-16932IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-164759IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-166072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MESNTVPPFL SKSYDMVDDP STNSVVSWSS SDNSFIVWNV GEFQKELLPK YFKHNNFSSF  60
VRQLNTYVGL VAWLLNFAKG YSVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-216672687Heat shock factor protein 1
5d5v_B1e-216672687Heat shock factor protein 1
5d5v_D1e-216672687Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap30073.m002276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575202.15e-40heat stress transcription factor A-1b isoform X2
SwissprotQ9SCW56e-30HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLB9S2331e-53B9S233_RICCO; Uncharacterized protein
STRINGXP_002520052.12e-54(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.16e-24heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]