PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30075.m001182
Common NameLOC8265526, RCOM_1338220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YA
Protein Properties Length: 213aa    MW: 23442.8 Da    PI: 9.6049
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30075.m001182genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.3e-32117173158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +ksrkpylheSRh+hAlrR+Rg gGrF
  30075.m001182 117 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IKSRKPYLHESRHQHALRRARGLGGRF 173
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-37115176IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.1116176IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27118173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23119141IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860121141IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23150173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTSSVHDHSD NSDANEQQQK LSETQNQSSP PATAMVHPGI STPNAHYTTS RQLGSGHAMA  60
AGGAAAYPYP DPYYRSIFAP YDAQPYPPQP YGGQPMVHLQ LMGIQQAGVP LPSDTVEEPV  120
FVNAKQYHGI LRRRQSRAKA ESENKVIKSR KPYLHESRHQ HALRRARGLG GRFLNAKKNQ  180
HQEQNEMASG DKSQSNINLN SDKSDIVSSD GKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21116179164NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30075.m001182
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523193.11e-157nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_025013858.11e-157nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP16e-66NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLB9SB331e-155B9SB33_RICCO; Nuclear transcription factor Y subunit A-4, putative
STRINGXP_002523193.11e-156(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-38nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]