PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30075.m001185

Common Name

LOC8265529, RCOM_1338750

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

BES1

Protein Properties

Length: 225aa MW: 23679.3 Da PI: 8.2764

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30075.m001185	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	118.2	1.2e-36	4	99	3	95
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl..eeaeaagssasaspesslq 95 s ++++ E+E++k+RER+RRai++ki+ GLR++G+y+l raD+neVl+ L++eAGwvv++DGttyr k ++ a ++s++a+p++s++ 30075.m001185 4 SSSTRSESEKEKTKLRERQRRAITTKIFHGLRRHGGYHLSPRADINEVLRELAKEAGWVVDPDGTTYRyKLVNRCptCGAIPNNTSTTATPTTSST 99 66778899************************************************************5434443312233345555666666644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.3E-33	5	114	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVGSSSTRSE SEKEKTKLRE RQRRAITTKI FHGLRRHGGY HLSPRADINE VLRELAKEAG 60 WVVDPDGTTY RYKLVNRCPT CGAIPNNTST TATPTTSSTV VAGGGAGAEC STTTSPCCID 120 PTAVMINANS NGEPTTTATS CTYICSDGSG GGGGDGDLPL AFYMYRGLAG GITYPPITTT 180 TVAAVGGGVK VATNHEQHQQ QGTYMQEAKA SNQSTPVESP LRRTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30075.m001185

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002523196.2	1e-166	protein BZR1 homolog 4
TrEMBL	B9SB36	1e-164	B9SB36_RICCO; BRASSINAZOLE-RESISTANT 1 protein, putative
STRING	XP_002523196.1	1e-165	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13979	16	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	7e-17	beta-amylase 7

Link Out ? help Back to Top
Phytozome	30075.m001185
Entrez Gene	8265529