PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004477
Common NameRCOM_1340980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 213aa    MW: 24694.7 Da    PI: 6.0297
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004477genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.89.9e-4151263127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     G+rFhP+d elv++yL++k+ g++ e+   i+e+ ++++ePw+Lp+       + +++ wyfF++ + ky+++kr  r+t++gyWk tgkd++++
  30076.m004477   5 IGYRFHPSDLELVDHYLRQKMLGNDDEV-WQIPEISVLSFEPWELPQhsimLS-NpNDQVWYFFCTPNYKYSNSKRVDRTTTAGYWKVTGKDRKIK 98 
                    69***********************999.66**************95455322.247889***********************************9 PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                    +     + +kktLvfy+gr pkg++t+Wvmhey+
  30076.m004477  99 D-----IAIKKTLVFYQGR-PKGVRTNWVMHEYS 126
                    8.....9*********765.789**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.0583145IPR003441NAC domain
SuperFamilySSF1019411.96E-444144IPR003441NAC domain
PfamPF023651.9E-246126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDTGIGYRFH PSDLELVDHY LRQKMLGNDD EVWQIPEISV LSFEPWELPQ HSIMLSNPND  60
QVWYFFCTPN YKYSNSKRVD RTTTAGYWKV TGKDRKIKDI AIKKTLVFYQ GRPKGVRTNW  120
VMHEYSPTFN FPTERDFVIC KIKRNGYAED IPNFEEGESS TAIAAHTENQ SCNNYNSTFE  180
GEELTPPVES GSGNYATEVR IILSLIRSIC IRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-31612518138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004477
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572349.11e-128NAC domain-containing protein 62
SwissprotF4JN352e-41NTL9_ARATH; Protein NTM1-like 9
TrEMBLB9RMW71e-160B9RMW7_RICCO; Uncharacterized protein
STRINGXP_002515106.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.25e-37NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]