PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004486
Common NameRCOM_1341370
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 233aa    MW: 26358.2 Da    PI: 9.8162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004486genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.38.4e-25141263127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                    +G+rFhPtd e  +++Lk+k+ g+++     i++++++++eP d+p+ v+a            k + +  r+nr tk+ yWk tgk ++v++k ++
  30076.m004486  14 VGYRFHPTDYEAADHFLKRKMIGRDNGK-PPISQIKVCDFEPCDIPALVNA------------KLEDQVWRSNRRTKARYWKPTGKPRKVKAKrTE 96 
                    7***********************9766.77***************54433............3334456999999***************98677 PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                    e++g+k++Lvfy +++pk+++t+W+mhe +
  30076.m004486  97 EEIGTKRSLVFYIKDHPKPRRTKWIMHEHE 126
                    88**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3412150IPR003441NAC domain
SuperFamilySSF1019419.29E-2913137IPR003441NAC domain
PfamPF023652.3E-1514126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTIPTRSDHS IPLVGYRFHP TDYEAADHFL KRKMIGRDNG KPPISQIKVC DFEPCDIPAL  60
VNAKLEDQVW RSNRRTKARY WKPTGKPRKV KAKRTEEEIG TKRSLVFYIK DHPKPRRTKW  120
IMHEHECSPN STLATQTKLS AKAVGRALVP ELKLSFEHVS QEVLVVEGIS NEIAANSSSD  180
EYEPSIGSTI GFENHNLIKM TAMSTYDKGD LNCVKSPVVK GPSPTFQVQV TKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-151512518138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004486
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8746492e-37HQ874649.1 Ricinus communis mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515116.11e-83NAC domain-containing protein 96
TrEMBLB9RMX61e-174B9RMX6_RICCO; Uncharacterized protein
STRINGXP_002515115.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-28NAC transcription factor-like 9