PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004490
Common NameRCOM_1341410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 183aa    MW: 21286.3 Da    PI: 5.7061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004490genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.81.1e-32121341128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdkevlsk 95 
                    lp+G rFhPt eel+++yLk+k  g ++e  + i+ev+i++++PwdL    k+ ++e yfF++r+   +tg+ +++r+t  g+Wk+tg++++v+  
  30076.m004490  12 LPVGWRFHPTSEELLDHYLKNKRLGVPTEG-SDIQEVQICNFDPWDLL-DNKSPNEERYFFCRREFYLKTGRiKRKRKTGGGFWKKTGETQSVTPV 105
                    799************************999.56**************6.455677899******99888876355669***************987 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++e++g+k+++v++   +p+   t+Wv+hey+ 
  30076.m004490 106 dSDEEIGTKRIFVYH---DPN--PTKWVIHEYEY 134
                    67888*********9...555..69*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-359139IPR003441NAC domain
PROSITE profilePS5100532.59612150IPR003441NAC domain
PfamPF023653.1E-2213133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGLMLSVPS DLPVGWRFHP TSEELLDHYL KNKRLGVPTE GSDIQEVQIC NFDPWDLLDN  60
KSPNEERYFF CRREFYLKTG RIKRKRKTGG GFWKKTGETQ SVTPVDSDEE IGTKRIFVYH  120
DPNPTKWVIH EYEYTAQLNS PVKFCLLYLE KLPCEKLPCE YDLQEIASVD LIVVVAISFY  180
VNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-181113314139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012444.11e-100NAC domain-containing protein 30 isoform X2
TrEMBLB9RMY01e-134B9RMY0_RICCO; Transcription factor, putative
STRINGXP_002515119.11e-135(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.16e-21NAC domain containing protein 4