PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004693
Common NameLOC8265156, RCOM_1348010
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 196aa    MW: 21101.8 Da    PI: 9.4425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004693genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-055375123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ Cg+ F ++  L  H++ H
  30076.m004693 53 FECHFCGRAFANSQALGGHQNAH 75
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-55179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-65180No hitNo description
PROSITE profilePS5015712.6955380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAESSSTPSQ QSHHKPSSAL KLFGFTLIEH EQDVAKSGET TSSNCSSVEI RKFECHFCGR  60
AFANSQALGG HQNAHKRERQ RARRAQYHCD RRLMAAAPVV SSHAMKATPN STICSAGLIS  120
SSDHFAGAKL RPPQPSNGQA RPLLFAPSSA ASRIYVGPPL RLAATSMPSF AEFNPAKLLS  180
DQEVEIDLCL KLTPSG
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004693
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515318.11e-142zinc finger protein GIS3
TrEMBLB9RNH91e-141B9RNH9_RICCO; Uncharacterized protein
STRINGXP_002515318.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-15C2H2 family protein