PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004701
Common NameLOC8265164, RCOM_1348190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 122aa    MW: 13733.8 Da    PI: 9.9918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004701genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-183165135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C  C+tt Tp+WR+gp g+ktLCnaCG++yrkk +
  30076.m004701 31 CIDCQTTRTPCWRSGPAGPKTLCNACGIRYRKKSR 65
                   889*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.99E-142466No hitNo description
SMARTSM004012.0E-132575IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-152680IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.822961IPR000679Zinc finger, GATA-type
CDDcd002023.26E-133081No hitNo description
PfamPF003205.5E-163165IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MMIFDLNTNV QESGMDKNQN STTSSEFKKS CIDCQTTRTP CWRSGPAGPK TLCNACGIRY  60
RKKSRRILGV EKGGAEKRKG KLVKAAEVRY KDIFQEQWKR KLGEEEQAAF LLMALSYGCV  120
SA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004701
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515326.14e-87GATA transcription factor 16 isoform X2
SwissprotQ9FJ106e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLB9RNI79e-86B9RNI7_RICCO; GATA transcription factor, putative
STRINGXP_002515326.11e-86(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-30GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]