PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002259
Common NameRCOM_1353670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 227aa    MW: 26193.6 Da    PI: 6.0349
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002259genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+lv  v+ +G + W+ Ia   g++R++k+c++rw++yl
    30078.m002259 15 KGPWVEEEDEQLVTFVTIFGDRKWDFIATASGLKRSGKSCRLRWLNYL 62
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-19965IPR009057Homeodomain-like
PROSITE profilePS5129423.361066IPR017930Myb domain
SMARTSM007172.3E-131464IPR001005SANT/Myb domain
PfamPF002491.7E-131562IPR001005SANT/Myb domain
SuperFamilySSF466893.72E-201691IPR009057Homeodomain-like
CDDcd001671.23E-91762No hitNo description
PROSITE profilePS500903.9563116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-86690IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAFQVASNQG EKLRKGPWVE EEDEQLVTFV TIFGDRKWDF IATASGLKRS GKSCRLRWLN  60
YLRPNLKRGH ISPEEEQIII QLHELWGNKY VLSICYSAVS HLKKKIEAQE GNFQCKADNA  120
KKDFLYQKGD TGSWKSHMED YKSIKDNIVM SDSPLEQYEL SSLTYLNSPY ETRIYDWMSM  180
LSNEQSGMKI HGDCGGFGSC YCYLMKWNAE DGDSSMLDTL GSLWNMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-141391582B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574820.21e-158transcription factor MYB27
TrEMBLB9S0E21e-169B9S0E2_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002519461.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-36myb domain protein 27