PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30078.m002282

Common Name

RCOM_1354410

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 65aa MW: 7284.4 Da PI: 9.6844

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30078.m002282	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.4e-09	14	41	1	27
TSSS-HHHHHHHHHHHHHTTTT.-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktI 27 +g+W++eEd +l+++++++G+g +W + 30078.m002282 14 KGPWSPEEDAKLKEYIERHGTGgNWIAL 41 79********************999655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-12	5	44	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.41E-8	8	60	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.76	9	38	IPR017877	Myb-like domain
Pfam	PF00249	8.3E-8	14	40	IPR001005	SANT/Myb domain
CDD	cd00167	2.59E-4	16	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE RHGTGGNWIA LPHKAAVEAI SIYFKEKNKS 60 IRTLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30078.m002282

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015574838.1	1e-26	transcription factor RAX2 isoform X2
Swissprot	Q9SJL7	3e-25	RAX2_ARATH; Transcription factor RAX2
TrEMBL	B9S0G5	5e-41	B9S0G5_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002519484.1	9e-42	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	1e-27	MYB family protein

Link Out ? help Back to Top
Phytozome	30078.m002282

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]