PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30078.m002308

Common Name

LOC8284503, RCOM_1355270

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TCP

Protein Properties

Length: 215aa MW: 23274.1 Da PI: 7.7511

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30078.m002308	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.9	5.2e-36	48	202	8	128
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg....... 88 ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++ +a + ++s+s+ + 30078.m002308 48 SKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPADPVstttghipFPVSQSV-------Pckvhsvg 136 79********************************************************66666333111111111111111.......13333333 PP TCP 89 .......................kaaksaakskksqksaasalnlak...esrakarararertre 128 ++++++a ++ + a+a + a+ +r +++++++e+++e 30078.m002308 137 ggghghgmfaltaapscrldleyRHMPFTALLLQPAAVVAAAAAAAAaevGERRQQQEEEEEEEEE 202 455556678899899999999997777777333333333333333331232222222222333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-30	48	179	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSSKMIFHSS NHRQETPNLN NSLIPAPTTE SQPRTQLTSH GRPTNSLSKD RHTKVNGRGR 60 RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGTGTVPA DPVSTTTGHI 120 PFPVSQSVPC KVHSVGGGGH GHGMFALTAA PSCRLDLEYR HMPFTALLLQ PAAVVAAAAA 180 AAAAEVGERR QQQEEEEEEE EEKKVLGNNG HQDKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30078.m002308

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519510.1	1e-159	transcription factor TCP11
TrEMBL	B9S0J1	1e-157	B9S0J1_RICCO; Uncharacterized protein
STRING	XP_002519510.1	1e-158	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-37	TCP family protein

Link Out ? help Back to Top
Phytozome	30078.m002308
Entrez Gene	8284503