PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002347
Common NameRCOM_1356760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 525aa    MW: 56967.8 Da    PI: 9.6147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002347genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057092123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  30078.m002347 70 FICEICNKGFQRDQNLQLHRRGH 92
                   89*******************88 PP
2zf-C2H212.70.00039146168123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  30078.m002347 146 WKCEKCSKKYAVQSDWKAHSKTC 168
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-76992No hitNo description
PROSITE profilePS5015710.8457092IPR007087Zinc finger, C2H2
SMARTSM003550.0227092IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355120111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-7141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MMSGGHHDAF SIPSSLPGFA HLDQQQNANP NPKPNPNSAA KKKRNLPGTP DPDAEVIALS  60
PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH  120
HDASRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SARFNSAPPA NLNFRNENSV VNLPHGAPGH GVQDIASISQ  240
FSTSTFRSDV NAMTCVSSDQ QKPAGLSLWL NQVNSHMNPA DTVANNSSLY ASSNSTGLPE  300
MVQIGSSNLY GSSSATNFGN LTLSGLPHGL KEEEGGDKRT NMTDSLPSLY SDNHQNKQSK  360
PVAPMSATAL LQKAAQMGST RSSNQSFFGG SSNYGLMSSS SSSSNTTNLN SLRQNRNELH  420
QVFQNVNKQQ ESNLTASSCS MPMGDAIMIA ASSGLDQVVL MQSSGKQSDP VQLKLQPGST  480
SLESGLTRDF LGMSGQSGRP FLPQEIAKFA SMSAVMGLSQ FTGNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-37142206367Zinc finger protein JACKDAW
5b3h_F2e-37142206367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574891.10.0zinc finger protein JACKDAW
TrEMBLB9S0N00.0B9S0N0_RICCO; Nucleic acid binding protein, putative
STRINGXP_002519549.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-107C2H2-like zinc finger protein