PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002348
Common NameLOC8284543, RCOM_1356970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 308aa    MW: 35297.9 Da    PI: 7.828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002348genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52111381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhP+deel+v+yLk+kv++++l++ +v++++d+yk++Pw+Lpkk++ +e+ewyfF++rd+ky++g r+nrat+sgyWkatg+dk++l++ 
  30078.m002348  11 LPPGFRFHPSDEELIVYYLKNKVTSNPLPA-SVVADLDLYKYNPWELPKKASFGEDEWYFFTPRDRKYPNGARPNRATASGYWKATGTDKPILTSc 105
                    79****************************.99***************9999999**************************************997 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ +g+kk Lvfy gr pkg ktdW+mheyrl
  30078.m002348 106 GTTSIGVKKALVFYGGRPPKGIKTDWIMHEYRL 138
                    7788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-637165IPR003441NAC domain
PROSITE profilePS5100560.73711165IPR003441NAC domain
PfamPF023652.8E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
METKTTSDIH LPPGFRFHPS DEELIVYYLK NKVTSNPLPA SVVADLDLYK YNPWELPKKA  60
SFGEDEWYFF TPRDRKYPNG ARPNRATASG YWKATGTDKP ILTSCGTTSI GVKKALVFYG  120
GRPPKGIKTD WIMHEYRLLD SLSLNPKNKA SMRLDDWVLC RVRQKNSFPR STWEDPNDPS  180
YYEPLAAGYF PKVNDPNTEM VKNYLYNDCP MLPYIFASQD FSCIDEASSS SFQSSDKSFA  240
SLLYEGDSVD KDIPQFSVTS FNNLLINNPL KRNQKCYINI PPSKKIIKRN PDEREDTAII  300
TIKENEVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6621746173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519550.10.0NAC transcription factor 29
SwissprotQ8GY427e-84NAC25_ARATH; NAC transcription factor 25
TrEMBLB9S0N10.0B9S0N1_RICCO; Transcription factor, putative
STRINGXP_002519550.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.18e-86NAC domain containing protein 25