PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30089.m001012
Common NameRCOM_1369310
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 238aa    MW: 26739.2 Da    PI: 9.7332
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30089.m001012genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.5e-12192235548
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                    +r rrk+kNRe+A rsR+RK+a+  eL  kv  Le+ N +Lkke
  30089.m001012 192 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEANIKLKKE 235
                    5889**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.5E-12181235No hitNo description
SMARTSM003380.0083188238IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.289190235IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.34E-8192235No hitNo description
PfamPF001704.3E-10192235IPR004827Basic-leucine zipper domain
CDDcd147071.81E-14192234No hitNo description
PROSITE patternPS000360195210IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGSQSNGQQS HLQPPYQLRR QNSWFSLTLN EVENQLENLG KPLGSMNLDE LLKNVWSTEA  60
NHLDIENTSS ASSLQQQSSL TLARALSGKT VDQVWKEILQ GQKKRFCQET KAQEKEPTLG  120
EITLEDFLVQ AGLFAEASLS PMELVTVDTV TPQSFPQKMA LSSSPSTGTL SDTMASVQKR  180
DAPDTVEKSI ERRLRRKIKN RESAARSRAR KQAYHNELVS KVSRLEEANI KLKKEKLN
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30089.m001012
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572638.11e-172ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
SwissprotQ9LES32e-51AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB9RPF81e-173B9RPF8_RICCO; DNA binding protein, putative
STRINGXP_002515627.11e-173(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124642532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-44ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]