PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30093.m000364
Common NameLOC8277541, RCOM_1375070
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 546aa    MW: 56768.2 Da    PI: 7.8382
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30093.m000364genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.15.3e-41154262294
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                    +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+qa+pai+++tgt++++a+++  ++s +ss+ + s++        
  30093.m000364 154 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTIPANFStLNVSLRSSGCTLSAPpsksaphs 249
                    789******************************************************************999777777777664444444444444 PP

            TCP  89 ........kaaksa 94 
                            + a  +
  30093.m000364 250 fhgalalaQ-AHHH 262
                    444443321.1111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-38159264IPR005333Transcription factor, TCP
PROSITE profilePS5136928.426160214IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MELTDMQNKK QNNTSSNQEP HHQQQQHHHH HHHHHQVAFD GRGPPSQGGP FMGSISIQAG  60
LSRTSNPLHH HQQQQQQQQQ HNLASSTPTT ATTGSTPSTS LSSSTSSTSA STSSAPTTPH  120
LVDASLAIAT RSGPSLSIVT STATTTTATA AAATPAKRST KDRHTKVDGR GRRIRMPATC  180
AARVFQLTRE LGHKSDGETI EWLLRQAEPA IIAATGTGTI PANFSTLNVS LRSSGCTLSA  240
PPSKSAPHSF HGALALAQAH HHSHYDQEGF AHTGMLGFHH HQHLLTADQI AEALPSGGGE  300
SGGGGGDGDS SENYARKRYR EDLFKEHSQQ ESGGGGGGGG GGGGGSPNKG FKTGLQLPKG  360
QQQETGSTGL LRPSNMLPAT AMWAVAPAPT SGTAGSTFWM LPVTAGGGGG PAMVATPAAS  420
GPAGPSEPVP QMWPFSTATP AAAASGNTLQ APLHFVPRFN LPANLDFGGG RGNALQLGSM  480
LMQQQPSQHL GLSMSETNLG MLAALNAYSR GGLNMNSDQN NPLEQHHQHQ QPQTTNSGDE  540
DPNSSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331345SGGGGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30093.m000364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580758.10.0transcription factor TCP8
TrEMBLB9SSP10.0B9SSP1_RICCO; Transcription factor, putative
STRINGXP_002529010.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-75TCP family protein