PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30094.m000671

Common Name

RCOM_1375690

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 260aa MW: 30413.1 Da PI: 9.2965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30094.m000671	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	9.8e-17	85	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY++YAk GF++rk+ +k +++ +i++ ++vC kegkr+++ + +e+++r+r+etr +Ck ++vk ++ + + +v+ ++++H H l+p 30094.m000671 85 FYRAYAKYNGFRIRKHDLRKLSKE-NIMMCKWVCCKEGKRDTKWYDlKEQKHRPRVETRENCKVLFRVKFHQvTVECVVIAFVKKHMHILVP 175 9**************9999555.599999******998887899999**************9899999********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	85	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEFRDKGVKS DMLIPTMQES DNDMIDQKIR DDSVMGEPYD KNRDTNTSIG ENQQVQPDGK 60 MNYCRLSVED VKSMIFQNCD AAEAFYRAYA KYNGFRIRKH DLRKLSKENI MMCKWVCCKE 120 GKRDTKWYDL KEQKHRPRVE TRENCKVLFR VKFHQVTVEC VVIAFVKKHM HILVPPSQVH 180 FLAADRPIKE ADKVQAKSIH MVRSKDEVLG GDAQRTLIYF EASKSKEAYI KIAKGVARIT 240 NALEYLEISH VDDKRQTKHM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30094.m000671

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9SCP4	0.0	B9SCP4_RICCO; Uncharacterized protein
STRING	XP_002523763.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15759	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-15	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	30094.m000671