PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30111.m000742
Common NameLOC8286035, RCOM_1401150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 336aa    MW: 38415.1 Da    PI: 6.8856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30111.m000742genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51101352128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    ppGfrFhP+deel+ +yL+++v++++l++ ++i+e+d+yk++PwdLpkk+  +e+ew+fFs+rd+ky++g r+nra+ sgyWka+g+d+++l++++
  30111.m000742  10 PPGFRFHPSDEELIIHYLRNRVASRPLPA-SIIAEIDLYKYNPWDLPKKALFGEDEWFFFSPRDRKYPNGARPNRAAGSGYWKASGTDRPILTSGS 104
                    9****************************.89***************88888999***************************************** PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    +++g+kk Lvfy+gr pkg ktdW+m+eyrl
  30111.m000742 105 KNIGVKKALVFYSGRPPKGIKTDWLMNEYRL 135
                    *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-617162IPR003441NAC domain
PROSITE profilePS5100559.3879162IPR003441NAC domain
PfamPF023654.5E-2510135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRPSSDFQFP PGFRFHPSDE ELIIHYLRNR VASRPLPASI IAEIDLYKYN PWDLPKKALF  60
GEDEWFFFSP RDRKYPNGAR PNRAAGSGYW KASGTDRPIL TSGSKNIGVK KALVFYSGRP  120
PKGIKTDWLM NEYRLLDTTT KPSRLKGSMR LDDWVLCRVR QKGSMSKNSS EVQDSHNKDL  180
FWYLPKMEEA CRTYTNYNTD MITECLNKDC RLLASILAGQ TLPPIDTISC VSNQESNKDN  240
SLTLVYHEDG SNKLNSPITV PSFDSSSPNE DARCNNFLPS DNQVSSTRNE DILPRDTIPC  300
TDVKYYGQNQ SQDSFYNPNP CDQISGFLEL NELIQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-70316811171NO APICAL MERISTEM PROTEIN
1ut4_B4e-70316811171NO APICAL MERISTEM PROTEIN
1ut7_A4e-70316811171NO APICAL MERISTEM PROTEIN
1ut7_B4e-70316811171NO APICAL MERISTEM PROTEIN
3swm_A5e-70316814174NAC domain-containing protein 19
3swm_B5e-70316814174NAC domain-containing protein 19
3swm_C5e-70316814174NAC domain-containing protein 19
3swm_D5e-70316814174NAC domain-containing protein 19
3swp_A5e-70316814174NAC domain-containing protein 19
3swp_B5e-70316814174NAC domain-containing protein 19
3swp_C5e-70316814174NAC domain-containing protein 19
3swp_D5e-70316814174NAC domain-containing protein 19
4dul_A4e-70316811171NAC domain-containing protein 19
4dul_B4e-70316811171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30111.m000742
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526377.10.0NAC transcription factor 32
SwissprotO492553e-80NAC29_ARATH; NAC transcription factor 29
TrEMBLB9SK580.0B9SK58_RICCO; NAC domain-containing protein, putative
STRINGXP_002526377.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-82NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]