PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008635
Common NameLOC8288427, RCOM_1428550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GeBP
Protein Properties Length: 415aa    MW: 46173.8 Da    PI: 4.3837
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008635genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.7e-38133227297
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                    lfqrlw++eDei lLqG++d+++++g s ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgk++sf+++hdq +fe+s+kiW 
  30128.m008635 133 LFQRLWTDEDEIELLQGFLDYTTQRG-SNHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLSKISSGKDFSFKSPHDQATFEISRKIWS 227
                    79************************.7799****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-35134227IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASEQHDTVF DHDLEDDDDE SSQSQDDDDD LENDDAIIEE NDDVLPDEED EEDLNPISCS  60
PAIAVPVAVP SASAVTIAVP NGVSDAPSLS LESTPDTKRQ RVESTTTTTL VIHQQQQEEK  120
KPQPQQMDES RRLFQRLWTD EDEIELLQGF LDYTTQRGSN HHDTALFYDQ IKSKLQLDFN  180
KNQLVEKLRR LKKKYRNVLS KISSGKDFSF KSPHDQATFE ISRKIWSSTG KICVEDANLD  240
DDDANPSPNP NFNDADVKIE DHNKSTPRSR KRSRSRSSTA AAAAPAAAAA SGGLKFEDKR  300
LPNDTDVSNN INNVNNISNS NVNVSHLIEE TVKSCLSPLF KELLSNALAS GPCGARGIGG  360
LAMNAMPLSF GVGEMMVDEK WRKQQVLELE VYSKRLELVQ DQIRAQLEEL RSMGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008635
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512250.10.0probable transcription factor At5g28040
TrEMBLB9RET10.0B9RET1_RICCO; Transcription regulator, putative
STRINGXP_002512250.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-55DNA-binding storekeeper protein-related transcriptional regulator