PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008730
Common NameRCOM_1430450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 161aa    MW: 18684.9 Da    PI: 10.9156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008730genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-173481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++++++G g+W +++ + g++R++k+c++rw++yl
    30128.m008730 34 KGSWTPEEDDLLRKCIQKYGEGRWCLVPTRAGLRRCRKSCRLRWLNYL 81
                     799*******************************************97 PP
2Myb_DNA-binding49.88e-1687131147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w++ 
    30128.m008730  87 RGAFTEDEVDLLIRLHKLLGNR-WTLIACRLP-GRTANDIKNFWNTN 131
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3592985IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-233084IPR009057Homeodomain-like
SuperFamilySSF466891.91E-2832128IPR009057Homeodomain-like
SMARTSM007176.9E-163383IPR001005SANT/Myb domain
PfamPF002499.5E-173481IPR001005SANT/Myb domain
CDDcd001675.74E-113681No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2385135IPR009057Homeodomain-like
PROSITE profilePS5129419.78486136IPR017930Myb domain
SMARTSM007171.2E-1486134IPR001005SANT/Myb domain
PfamPF002495.3E-1587132IPR001005SANT/Myb domain
CDDcd001673.05E-1089132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MLGWRQAISK LTSLKVASDT NNVCRSLWSS KVRKGSWTPE EDDLLRKCIQ KYGEGRWCLV  60
PTRAGLRRCR KSCRLRWLNY LKPDIKRGAF TEDEVDLLIR LHKLLGNRWT LIACRLPGRT  120
ANDIKNFWNT NLGKKKIVSC KKGDNVKEKT QKTTKIDVIK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-26341354104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-251013530158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-251013530158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-26341354104C-Myb DNA-Binding Domain
1msf_C5e-26341354104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008730
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570345.11e-112transcription factor MYB114
SwissprotQ9FNV97e-55MY113_ARATH; Transcription factor MYB113
TrEMBLB9RF161e-112B9RF16_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002512335.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]