PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008801
Common NameLOC8287061, RCOM_1432450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YB
Protein Properties Length: 158aa    MW: 17768 Da    PI: 7.3064
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008801genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.91.9e-50398297
          NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                    eqdr+lPianv r+mk++lP  akisk+aket+qec++efisfvt+easdkc++e+rkt+ngdd++wal++lGf++y+e++  yl+k+re+e+ek
  30128.m008801  3 DEQDRLLPIANVCRVMKQILPPTAKISKEAKETMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIVRYLHKFREAEREK 98
                   69*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-492135IPR009072Histone-fold
SuperFamilySSF471131.6E-375105IPR009072Histone-fold
PfamPF008081.0E-25872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.3E-183654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.3E-185573No hitNo description
PRINTSPR006154.3E-187492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVDEQDRLLP IANVCRVMKQ ILPPTAKISK EAKETMQECA TEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALSSLGFDNY AEAIVRYLHK FREAEREKVI NNQSKAAAAA ATHQDKDFGD  120
FNCKGCQKEK QQKTETSNPL EFRVLEKGNS SSSFTKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-41293192Transcription factor HapC (Eurofung)
4g92_B4e-41293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512405.11e-116nuclear transcription factor Y subunit B-4
SwissprotO040274e-56NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLB9RF861e-115B9RF86_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGXP_002512405.11e-115(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-58nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]