PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008883
Common NameLOC8269795, RCOM_1434490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 151aa    MW: 16939.5 Da    PI: 10.9839
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008883genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.6e-202457134
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                   C+ C+tt+TplWR gp g+k+LCnaCG++yrk++
  30128.m008883 24 CTDCKTTETPLWRAGPAGPKSLCNACGIRYRKTK 57
                   ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-141759No hitNo description
Gene3DG3DSA:3.30.50.104.6E-171873IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.8351854IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-161875IPR000679Zinc finger, GATA-type
CDDcd002029.62E-142373No hitNo description
PfamPF003201.1E-172457IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDLDERKSSC GDDDKSKNDS KKSCTDCKTT ETPLWRAGPA GPKSLCNACG IRYRKTKRDI  60
LSFHKSPFKR RKRPNITATT PSSTSTATTS ATTNEVRNSL KMRLIVVGQS MLFQRSKIVR  120
KQRCQRRRKL GQEEQQAAFS LMALSCGSVF A
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512484.11e-108GATA transcription factor 15
TrEMBLB9RFG51e-106B9RFG5_RICCO; Uncharacterized protein
STRINGXP_002512484.11e-107(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-24GATA transcription factor 15