PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008963
Common NameRCOM_1436190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 156aa    MW: 17304.3 Da    PI: 7.8238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008963genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-116586526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    C++f +tG+C++Gd+Ck+ H+
  30128.m008963 65 VCNRFVKTGFCPFGDSCKYLHP 86
                   5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-12446No hitNo description
PfamPF062202.3E-8539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.9346088IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-66287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-76488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-76585IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-86586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTPI ARKRHLQSSS HLRSKSIWYN SLNSNFIDPN QAHTNGAAGG  60
FTKGVCNRFV KTGFCPFGDS CKYLHPTTTT NNLQSTGLMD NPQSPFIPGN QSLQDDVVRD  120
NMGMSWGNLP PSLKPPPEGG XGLLYHIEMP LACVLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570364.11e-102zinc finger CCCH domain-containing protein 3
TrEMBLB9RFP41e-113B9RFP4_RICCO; Uncharacterized protein
STRINGXP_002512563.11e-113(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-38C3H family protein