PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m009030
Common NameLOC8275009, RCOM_1437550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 448aa    MW: 48714.1 Da    PI: 8.3281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m009030genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115884127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C+++ rtG C++G++C+F+H+p
  30128.m009030 58 PGEPDCSYYIRTGLCRFGATCRFNHPP 84
                   5789*********************97 PP
2zf-CCCH39.21.2e-12105129327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C+++++tGtCk+G++CkF+H++
  30128.m009030 105 QPECQYYLKTGTCKFGATCKFHHPK 129
                    799********************96 PP
3zf-CCCH36.96.2e-12153175527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    +C +++rtG+Ck+G++CkF+H++
  30128.m009030 153 ECAYYLRTGQCKFGSTCKFHHPQ 175
                    7********************97 PP
4zf-CCCH37.93.1e-12309335127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+f+++tG Ck+G+ C+F+H++
  30128.m009030 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335
                    5789*********************96 PP
5zf-CCCH38.91.4e-12355381127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++lC f++r+G Ck+G++CkF H++
  30128.m009030 355 PGEPLCIFYSRYGVCKFGPSCKFDHPM 381
                    589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-45784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765885IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-85984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-46383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14102130IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5108128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225148176IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6151176IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4154174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596308336IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6308335IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5312338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5314336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671354382IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6354381IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5357381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDFDAGIPMS RTAPPPPPPP LPVTEDPSLS ASLNEDAMWQ MNLRSSETMD SGPYPEHPGE  60
PDCSYYIRTG LCRFGATCRF NHPPNRKLAI AAARMKGEFP ERIGQPECQY YLKTGTCKFG  120
ATCKFHHPKD KAGIAGRVSL NILGYPLRPN EIECAYYLRT GQCKFGSTCK FHHPQPTNVM  180
VPLRGSPVYP TVQSPTTPGQ QSYTGGVTNW SRASFITSPR WQAPSSYTPL ILPQGVVSVP  240
GWNAYSGQLG SVSSPEGQQQ TGNSQIYGTS RQSESVNTGS QGTLSPLRAG SMPVGFYALQ  300
RDNVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC  360
IFYSRYGVCK FGPSCKFDHP MGIFTYNLSA PSSADAPVRR LLGSSSGSAA LTLSTEGLVD  420
AGSTKPRRLS LSEPRQMPSG DDNIDTEG
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m009030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512627.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLB9RFV80.0B9RFV8_RICCO; Nucleic acid binding protein, putative
STRINGXP_002512627.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1