PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m006971
Common NameRCOM_1445050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 212aa    MW: 23517.3 Da    PI: 9.297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m006971genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20554255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++aa++k++g
  30131.m006971  5 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAATAYDAAALKFKG 54
                   7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-33463IPR001471AP2/ERF domain
SMARTSM003802.3E-37568IPR001471AP2/ERF domain
PROSITE profilePS5103225.33562IPR001471AP2/ERF domain
PfamPF008471.4E-13554IPR001471AP2/ERF domain
CDDcd000182.70E-19563No hitNo description
SuperFamilySSF541711.18E-22563IPR016177DNA-binding domain
PRINTSPR003671.1E-11617IPR001471AP2/ERF domain
PRINTSPR003671.1E-112844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRRRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAEA AATAYDAAAL KFKGTKAKLN  60
FPERVQGAGA RPDNLSFMAT NQNAILVPNN NYNVFAPSQF PPPPLPIIRP PAAIPEEFPN  120
LYQYAQLLSS NDDSYLQYVG SGGLNYNQEP FVSPCLSMTS SSSASSGLSQ QLQPAAEEEF  180
FSRFLPQMPA GFSSGTHSHQ QEREFDRGNA PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-25465466ATERF1
3gcc_A7e-25465466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m006971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512829.21e-156ethylene-responsive transcription factor ERF113
TrEMBLB9RGX01e-155B9RGX0_RICCO; DNA binding protein, putative
STRINGXP_002512829.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-32related to AP2 6l