PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30131.m007011

Common Name

LOC8285288, RCOM_1446140

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 180aa MW: 20329.5 Da PI: 6.785

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30131.m007011	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H 30131.m007011 54 FQCLYCPRKFYTSQALGGHQNAH 76 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.38E-6	51	81	No hit	No description
PROSITE profile	PS50157	10.845	54	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0010582	Biological Process	floral meristem determinacy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MADPSIYNFF NQQQNQPQQQ QQQQQQEQLP FPSSRPSRKN PIPQQPPTSS SRLFQCLYCP 60 RKFYTSQALG GHQNAHKRER AAAHRNLSLQ SPPNISAHYF PPDPYMMNHP DAAPFLDDHH 120 HYYCLEPKQT MTDYQFPSPP QVGFCGGSTA SSALNAIDDS LSPVADLNAD PVNLDLTLHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30131.m007011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002512878.1	1e-129	zinc finger protein GIS2
TrEMBL	B9RH19	1e-128	B9RH19_RICCO; Uncharacterized protein
STRING	XP_002512878.1	1e-128	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15014	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	30131.m007011
Entrez Gene	8285288