PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30131.m007102

Common Name

LOC8284344, RCOM_1449160

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

SRS

Protein Properties

Length: 199aa MW: 22113.9 Da PI: 8.3994

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30131.m007102	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	176.8	9.7e-55	9	138	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g+++CqdCGnqakkdC+++RCRtCCks+gf+C+thvkstWvpa++r++r q+ ++ + ++++ +++ +++++ + ++ 30131.m007102 9 GGSRCQDCGNQAKKDCVYMRCRTCCKSKGFHCQTHVKSTWVPAYRRQQRLQNVSSIQLQQQH--PQDQLHNPKR-----------LR-------EN 84 7789*******************************************8888776544422..1222222221...........11.......22 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 t+++P+ev+s a frc+rvss+d+g++++aYqt++sigGhvfkGiLydqG+ 30131.m007102 85 PATENFPAEVNSLATFRCLRVSSIDEGDDQFAYQTSMSIGGHVFKGILYDQGPT 138 34678*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-55	10	137	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.5E-29	13	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-25	90	137	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MMMRQGGLGG SRCQDCGNQA KKDCVYMRCR TCCKSKGFHC QTHVKSTWVP AYRRQQRLQN 60 VSSIQLQQQH PQDQLHNPKR LRENPATENF PAEVNSLATF RCLRVSSIDE GDDQFAYQTS 120 MSIGGHVFKG ILYDQGPTYT IGESSTTQIQ EPNLANAAAL TSTTLAPTSS VDADSLPPSY 180 PFPFNAFMSG TQLFLHPKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30131.m007102

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002512967.1	1e-150	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	4e-58	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	B9RHA8	1e-148	B9RHA8_RICCO; Uncharacterized protein
STRING	XP_002512967.1	1e-149	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-54	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	30131.m007102
Entrez Gene	8284344

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]