PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30136.m001043
Common NameRCOM_1461320
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 207aa    MW: 23614.4 Da    PI: 5.3566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30136.m001043genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278e-09113153954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  30136.m001043 113 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 153
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-10110158No hitNo description
SuperFamilySSF474595.76E-14110163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6114153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSMENQIFHD QIPYINPYCP AGYFFQTHQT PPSSIPISIS PFLRDHTGNR HTEVEEEEAA  60
AEEEEEEEEE LGAMKEMMFK IAAMQPVNID PATIYKPKRR NVRISDDPQS VAARHRRERI  120
SEKIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKKQIRLL QSNTNSNSNN NNNQDPPCIG  180
DWQPLGSNSS LEPQAAVADH GFTFRSN
Cis-element ? help Back to Top
SourceLink
PlantRegMap30136.m001043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517254.21e-155transcription factor HEC3
TrEMBLB9RU351e-154B9RU35_RICCO; Uncharacterized protein
STRINGXP_002517254.11e-154(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-46bHLH family protein