PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30136.m001048
Common NameLOC8259150, RCOM_1461770
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 398aa    MW: 44149 Da    PI: 4.3571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30136.m001048genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-4851321128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    l pGfrFhPtd elv++yLk+kv gk++++ e+i+evdiyk+ PwdLp k  +++++ +wyfF++r+kkya+g r +rat+ gyWk+tgkd++v  
  30136.m001048   5 LSPGFRFHPTDVELVKYYLKRKVLGKRFHM-EAIAEVDIYKYAPWDLPnKsLLRSGDLKWYFFCSREKKYASGFRMKRATEFGYWKTTGKDRPVRY 99 
                    579***************************.89**************95345566788*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg  ktLvf++g+apkg++tdWvm ey+l
  30136.m001048 100 -DDQVVGSIKTLVFHQGKAPKGNRTDWVMYEYKL 132
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-554155IPR003441NAC domain
PROSITE profilePS5100553.2115155IPR003441NAC domain
PfamPF023651.4E-237132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGKKLSPGFR FHPTDVELVK YYLKRKVLGK RFHMEAIAEV DIYKYAPWDL PNKSLLRSGD  60
LKWYFFCSRE KKYASGFRMK RATEFGYWKT TGKDRPVRYD DQVVGSIKTL VFHQGKAPKG  120
NRTDWVMYEY KLEEQGLADR GVVQDSYVLC SIFKKDGPGP KNGAQYGAPF REEDWDDDEL  180
EEDEVVNGVG ADVDMVVPVN QNDCVATTSS YLPETEREST LLCPSETLLS DVNTGAVVAA  240
DYYVACSDAP PTQDVVNEDD IIELLGHFRE DNAEMNDLDG QGHQVAEVNP ISDGLGIYDD  300
LGDLGSLVGF SGNAAASFTM DKGQYLELTD LEVPLNFSTE AAGGQVQTSG NPQPFFGWGE  360
GVRARVRGQS GGNPDQPFLG WGEGFSDDEG AFGYHHPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44516117171NO APICAL MERISTEM PROTEIN
1ut4_B2e-44516117171NO APICAL MERISTEM PROTEIN
1ut7_A2e-44516117171NO APICAL MERISTEM PROTEIN
1ut7_B2e-44516117171NO APICAL MERISTEM PROTEIN
3swm_A3e-44516120174NAC domain-containing protein 19
3swm_B3e-44516120174NAC domain-containing protein 19
3swm_C3e-44516120174NAC domain-containing protein 19
3swm_D3e-44516120174NAC domain-containing protein 19
3swp_A3e-44516120174NAC domain-containing protein 19
3swp_B3e-44516120174NAC domain-containing protein 19
3swp_C3e-44516120174NAC domain-containing protein 19
3swp_D3e-44516120174NAC domain-containing protein 19
4dul_A2e-44516117171NAC domain-containing protein 19
4dul_B2e-44516117171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30136.m001048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517259.10.0NAC domain-containing protein 82
TrEMBLB9RU400.0B9RU40_RICCO; Transcription factor, putative
STRINGXP_002517259.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.44e-86NAC domain containing protein 82