PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30138.m003866

Common Name

LOC8264628, RCOM_1465160

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 200aa MW: 22905.5 Da PI: 6.1557

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30138.m003866	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.8	6.5e-15	84	141	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK++ ++eL v L +eN+ L+++l++ ++ +++ +e 30138.m003866 84 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHVSECHDRVLQE 141 79********************************************999877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-16	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.588	82	133	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-13	84	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.25E-13	84	133	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-13	84	157	No hit	No description
CDD	cd14702	5.80E-20	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MLPGELTGIQ YLAPENPIPF SANLGLMQQT SMPTFHYNRL ISNFYSNPSF PQPVQDFTQQ 60 SSSLSNNSTS DEAEENQLSI IDERKQRRMI SNRESARRSR MRKQKHLDEL WSQVVRLRTE 120 NHNLIDKLNH VSECHDRVLQ ENARLKEEAS DLRQMLTDLQ IGSPFTASAL RDLEDVPCNT 180 AHLRAESSNQ SISSSVDLLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30138.m003866

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514552.1	1e-146	basic leucine zipper 43
Swissprot	Q9FMC2	1e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	B9RLD3	1e-145	B9RLD3_RICCO; Ocs element-binding factor, putative
STRING	XP_002514552.1	1e-146	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-45	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	30138.m003866
Entrez Gene	8264628

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]