PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30138.m003906

Common Name

RCOM_1466940

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 190aa MW: 21589.2 Da PI: 9.6807

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30138.m003906	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.9	1.1e-13	92	150	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RKk++ieeL v L + N++L +++ +l ++ ++ +e+ 30138.m003906 92 RKLKRMISNRESARRSRIRKKKQIEELDCQVNHLRTMNHQLSEKVIHLLENNQQILQEN 150 5789*************************************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-11	86	146	No hit	No description
SMART	SM00338	5.8E-13	88	152	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	90	153	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-11	92	144	No hit	No description
Pfam	PF00170	2.9E-12	92	150	IPR004827	Basic-leucine zipper domain
CDD	cd14702	8.37E-15	93	141	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEPHEIKGFH YPPHANSSVP GLLSLSPTDN TLSYANLSQN PESSSSFFSR SFPSNSPIHF 60 PLHIFSTNTS PASADSSLNK TSNHQVGNSH ERKLKRMISN RESARRSRIR KKKQIEELDC 120 QVNHLRTMNH QLSEKVIHLL ENNQQILQEN SQLKERVSSL QLVLSDLLIP MRNVEESICN 180 PNRLRGETSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30138.m003906

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571979.1	1e-135	basic leucine zipper 43
TrEMBL	B9RLH1	1e-134	B9RLH1_RICCO; DNA binding protein, putative
STRING	XP_002514590.1	1e-134	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13044	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	2e-32	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	30138.m003906