PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m004001
Common NameRCOM_1470410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 191aa    MW: 22174.4 Da    PI: 7.8577
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m004001genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-29141512128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyWkat 86 
                    ppG+rF Ptdeel+++yL kkv  ++l+ + +  i+++++++  P++L  +++ +e+ewyfF+++ ++ +  ++k+++           +g+Wka 
  30138.m004001  14 PPGYRFLPTDEELITDYLMKKVCYEPLPPHVIpeIDDTELHSKAPSSLV-TFSCGEREWYFFIHEGEAFPGRHQKEKKskgssrtvgDGKGFWKAN 108
                    9*************************66522224777789999*****6.777899********99999866666655345555444449****** PP

            NAM  87 gkdkevlskkgelvglkktLvfykgrap.kgektdWvmheyrl 128
                    gk++++++++g++   k  L++++g++p +++kt+W m+ yrl
  30138.m004001 109 GKEQPICNSDGKVFAFKIHLTYFSGSSPgNARKTHWKMEKYRL 151
                    ***********************996653789*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-3311180IPR003441NAC domain
PROSITE profilePS5100531.08313183IPR003441NAC domain
PfamPF023651.5E-1714151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNMEFQDDIL SKIPPGYRFL PTDEELITDY LMKKVCYEPL PPHVIPEIDD TELHSKAPSS  60
LVTFSCGERE WYFFIHEGEA FPGRHQKEKK SKGSSRTVGD GKGFWKANGK EQPICNSDGK  120
VFAFKIHLTY FSGSSPGNAR KTHWKMEKYR LPSDRCHKAG CYLKFETNCT TEEYWMLHKI  180
TPFLMTITII Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-2011513140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m004001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514683.21e-141NAC transcription factor 32
TrEMBLB9RLR41e-141B9RLR4_RICCO; Transcription factor, putative
STRINGXP_002514683.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-24NAC-domain protein 101