PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30138.m004053

Common Name

RCOM_1471420

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 289aa MW: 31450 Da PI: 4.9569

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30138.m004053	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT++Ed++l+ +++++G g W+t +++ 30138.m004053 14 KGAWTADEDQKLIAYIQKHGEGGWRTLPQKAE 45 79************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-11	5	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.299	9	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.5E-7	11	43	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-7	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	1.87E-4	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGRTPCCSEA GLKKGAWTAD EDQKLIAYIQ KHGEGGWRTL PQKAESQKLK LQNLLSVYII 60 CLLSLCDGHE LQNDVTHNPI PPSSHFQSSS SRPHLPNNLV AKLAPSWRCL VDKDSPSSAM 120 PRPVSASASL LNKMATRFST PYSCLHTTLK SILSMSADHE NYVFEADDNY LQPSASASSL 180 SSRSVCTSTN GVASDQMATI DDNTAPLINP FDLELFRYFH EVGVDGGVLG TSTSDAYDYN 240 MESPANNYSP EISAYDDELG LISSIDALDT GHGHAQLDRS MDGSTKFCY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30138.m004053

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572018.1	1e-171	transcription factor MYB3
TrEMBL	B9RLW5	0.0	B9RLW5_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002514734.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74080.1	3e-20	myb domain protein 122

Link Out ? help Back to Top
Phytozome	30138.m004053