PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m004054
Common NameRCOM_1471430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 263aa    MW: 29697.8 Da    PI: 6.2363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m004054genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161567148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     rg WT +Ed++l+ +++q+G g+W++ +++        +Rt++++k++w+++l
    30138.m004054 15 RGQWTSDEDQKLLTYIQQHGHGNWNLLPQKAAiamylPKRTDNEIKNHWNTHL 67
                     89********************99877666666666669***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3831071IPR017930Myb domain
SuperFamilySSF466892.14E-151277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-211368IPR009057Homeodomain-like
SMARTSM007172.6E-121469IPR001005SANT/Myb domain
PfamPF002497.4E-141567IPR001005SANT/Myb domain
CDDcd001675.22E-141867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRSSRYDIA TGVRRGQWTS DEDQKLLTYI QQHGHGNWNL LPQKAAIAMY LPKRTDNEIK  60
NHWNTHLKKR LARSGIDPVT HKSRSLTLGS INGDSKNVSY LSHMAQWENA RLEAEARSVR  120
DSKLRQNEQL AAGSELVNNM ATASIVLPRC LDVLTAWQNI VGNSNRNYGY GIEFSSGNSD  180
AESLITYSLK NTNLGEYNGE SIDDQTGQPH LGSRGGEQNV AYGDMDEIWN NGEEIYGRQQ  240
LWNDNLVDLE DWVPSYMHAH IFC
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m004054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571973.10.0transcription factor MYB106
TrEMBLB9RLW60.0B9RLW6_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002514735.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.19e-44myb domain protein 106