PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30143.m001171

Common Name

LOC8274859, RCOM_1480320

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 218aa MW: 24370.3 Da PI: 4.2896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30143.m001171	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.9	9.8e-40	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v++il+lqqq+++l++e++ 30143.m001171 7 SCGACKFLRRKCTSECVFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPVYGCVAHILALQQQIASLQEEID 102 6**********************9789****************************************************************9 PP DUF260 96 llkee 100 l+++ 30143.m001171 103 ILGHQ 107 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.498	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MTGPGSSCGA CKFLRRKCTS ECVFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITISY EALARMRDPV YGCVAHILAL QQQIASLQEE IDILGHQMTN LAVGIASCEN 120 PQATLNPRCE MQFSSLQDAM IPEYYQNPQD TQVNNSGYTT GNETLDSQMN VELPPLYEWE 180 DQDPFCDFHP NCLDRLLEGV DQEIFPYWSW LDSANNAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	3	114	7	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	3	114	7	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30143.m001171

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002524207.1	1e-165	LOB domain-containing protein 33
Swissprot	Q9LHS8	2e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	B9SDY8	1e-164	B9SDY8_RICCO; LOB domain-containing protein, putative
STRING	XP_002524207.1	1e-164	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-49	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	30143.m001171
Entrez Gene	8274859

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]