PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30143.m001209
Common NameRCOM_1482910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 426aa    MW: 47790.9 Da    PI: 7.7122
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30143.m001209genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-102452821954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ ++++ LA+++gL+ +qV++WF N R +
  30143.m001209 245 FEHflHPYPTDSDKQILAQQTGLSRTQVSNWFINARVR 282
                    564459******************************88 PP
2BELL895.1e-29113183272
           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    r e+q k +kL+ +l+eV++rYk y++q+q v+ sF++vaglg+a+pY   A k +S+hF cLk+a+ +qi
  30143.m001209 113 RLEHQWKNSKLMLMLDEVYRRYKLYCQQMQSVVESFQTVAGLGNAAPYFCYAIKLVSKHFTCLKNALLDQI 183
                    779*****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-2960181IPR006563POX domain
PfamPF075263.7E-2965179IPR006563POX domain
PROSITE profilePS5007112.082223286IPR001356Homeobox domain
CDDcd000861.31E-12226287No hitNo description
SMARTSM003892.8E-11226290IPR001356Homeobox domain
SuperFamilySSF466891.03E-17229294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27229290IPR009057Homeodomain-like
PfamPF059201.3E-18243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNPSPVPFSS IQTSQQQGLS LSLSFELNSQ KYNAASVLGD FLKQNGGSGI RSSVPLGPFT  60
GYASILKSSK FLKPAQQVLD DLFGTVNCEV LDFSLDCLSE SEVMRENVGF SDRLEHQWKN  120
SKLMLMLDEV YRRYKLYCQQ MQSVVESFQT VAGLGNAAPY FCYAIKLVSK HFTCLKNALL  180
DQIHFTGKTS DDGNEKVPRF WAADEQGSVQ HQNPALNFSF LQHPVWRSQR GLPDHAVALL  240
KTWLFEHFLH PYPTDSDKQI LAQQTGLSRT QVSNWFINAR VRLWKPMVEE VYKLASQQAQ  300
VPLEAVNHNA NLPSDLSMEK LPQTSNQQKA ENFHLKRSRN ELADIPVQRQ DHKSVSFDNL  360
TRHYQTGISG SNGVSLALGL HQNNGTDSSR PLPITIAQHV NLEMISMMGS GSAATFQVQN  420
QHFGKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15232290563Homeobox protein Meis2
3k2a_B3e-15232290563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30143.m001209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524245.20.0BEL1-like homeodomain protein 9
TrEMBLB9SE260.0B9SE26_RICCO; Bel1 homeotic protein, putative
STRINGXP_002524245.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-73TALE family protein