PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30146
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 229aa    MW: 25584 Da    PI: 5.023
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30146genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP51.31.9e-162491567
  E2F_TDP 15 kllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67
             +ll++s++g+++lne+a +L    v  ++RRiYDi+NVLe+++l++k +kn++
    30146  2 TLLRESPKGTLDLNEAAVAL---LV--QKRRIYDITNVLEGIGLVTKVSKNKV 49
             5789999*************...89..***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.7E-14153IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-16249IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.3E-16249IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.85E-11349IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440742.62E-676147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTLLRESPKG TLDLNEAAVA LLVQKRRIYD ITNVLEGIGL VTKVSKNKVV LRHVHSQPSL  60
AEYEHQANVA SNTVVDDKLD QMKEIIRSIF ADTQHEAGIF IPESEMLECA ALSRAMLIAT  120
SAPTGTTLQV PSPFGSENLI PHYRLLLATD DEYSDGMQVF VLSSETNKSS SSERVRCGEY  180
ENPPIPEMLG NRAMHEPHPE KKCHDDSYWF VEKETKLEVN VNELYKTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005820.0CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416444.11e-170transcription factor E2F
TrEMBLA4RSR61e-169A4RSR6_OSTLU; Transcription factor E2F
STRINGABO947371e-170(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.22e-24E2F transcription factor 1