PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013749
Common NameRCOM_1496050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 277aa    MW: 31161.1 Da    PI: 7.4094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013749genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-154489148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++ +eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
    30147.m013749 44 RGPFAPEEEATIIQLHGMLGNK-WAAIASKLP-GRTDNEIKNFWNTHL 89
                     899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-112551IPR009057Homeodomain-like
SuperFamilySSF466898.48E-212594IPR009057Homeodomain-like
PROSITE profilePS500904.172538IPR017877Myb-like domain
PROSITE profilePS5129425.3843993IPR017930Myb domain
SMARTSM007174.7E-154391IPR001005SANT/Myb domain
PfamPF002491.3E-144489IPR001005SANT/Myb domain
CDDcd001675.10E-104689No hitNo description
Gene3DG3DSA:1.10.10.609.1E-235290IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MILLEIKLSS LAGQTKFNIK FSLLRCGKSC RLRWTNYLRP DIKRGPFAPE EEATIIQLHG  60
MLGNKWAAIA SKLPGRTDNE IKNFWNTHLK KRLNLKLRQS CSPSQPINVK CESSTTRHMV  120
QWESARVEAE ARLSMESLLV NSSSSVKIEN DYFLQLWKSE VGESFRNLKQ KDGEASESPI  180
SQNSSLTKNG SGSVDNEKKV QMTSTKTSTS NDTSHEQEDY KPNIAIMTYS DSINSNEFTD  240
SSDTALKLLL DVPGGNDMEF LEGQTESFSS FLNLKCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1969316105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347203e-46KM034720.1 Jatropha curcas clone JcMYB100 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014065.10.0transcription factor MYB41
SwissprotQ9M2D93e-72MYB17_ARATH; Transcription factor MYB17
TrEMBLB9R9C20.0B9R9C2_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002510797.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-68myb domain protein 17