PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013813
Common NameRCOM_1507490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 495aa    MW: 55395.1 Da    PI: 5.1896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013813genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.17.1e-14148170426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+++++tGtCk+G++CkF+H+
  30147.m013813 148 EDCSYYMKTGTCKFGSNCKFNHP 170
                    89********************9 PP
2zf-CCCH31.82.5e-10193218227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ +C++++rtG CkyG  C+++H++
  30147.m013813 193 GQTECKYYLRTGGCKYGKACRYNHSR 218
                    6789********************95 PP
3zf-CCCH40.44.7e-13245270126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +++++C++++r+G CkyG++C+F+H+
  30147.m013813 245 PGERECPYYMRNGSCKYGANCRFNHP 270
                    5789*********************9 PP
4zf-CCCH28.52.5e-09380406127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++f++tG Ck+ ++Ck++H++
  30147.m013813 380 PGQPECSYFMKTGDCKFKSNCKYHHPK 406
                    5789*********************96 PP
5zf-CCCH36.39.6e-12427451226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++ +C++++r+G+Ck+G+ CkF H+
  30147.m013813 427 GQNICSYYSRYGICKFGPACKFDHP 451
                    6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-7143172IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962144172IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-11148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5150169IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577191219IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8193218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6195219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5197218IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183244272IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10246270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6247271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5250269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202379407IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4379406IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7381406IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.24E-5383407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6423451IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6425452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887425453IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9427451IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4430450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MENSEESSCV TSSCDKSPNL GIESPAAYSC NAAVTQSDEK VEIHEQLKNQ LNLKKIEEKK  60
LEEVDKEDDF DDEGEKDSIG WHQDDGFNSG ESNGGEEEQE YNINNNDYDK VGNDDDDDDD  120
VEKKDERSNN GVNRRHNQYQ YPVRPEAEDC SYYMKTGTCK FGSNCKFNHP VKRKMQVSKE  180
KVKEREEATD RPGQTECKYY LRTGGCKYGK ACRYNHSRAK PLLLQAKTAV FPALDLNFLG  240
LPIRPGEREC PYYMRNGSCK YGANCRFNHP DPTTVGGSDP LAFSNGGSAS LQNSLQSNIA  300
SWSSPGGLNE TPSFMSIMFS PTQGVPSQNP EWNGYQVCYF PLYERSMHQP PAYVISNPAT  360
DTNVYAHQQQ IQVEEFPERP GQPECSYFMK TGDCKFKSNC KYHHPKNHIS KSPPCVLSDK  420
GLPLRPGQNI CSYYSRYGIC KFGPACKFDH PIQPVSSTTG SADDVRMPFS DSGTKEEAKM  480
ALSGNASDIA IQQSV
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581492.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLB9RAN90.0B9RAN9_RICCO; Nucleic acid binding protein, putative
STRINGXP_002511264.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-139C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]