PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013964
Common NameRCOM_1510830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 88aa    MW: 9941.98 Da    PI: 8.4918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013964genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-085280129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     rg+WT+ Ed+ll d++  +G g W+ + +
    30147.m013964 52 RGPWTAVEDKLLTDYISIHGEGKWSNVVK 80
                     89**********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-104481IPR009057Homeodomain-like
SuperFamilySSF466898.61E-84581IPR009057Homeodomain-like
PROSITE profilePS5129410.8584788IPR017930Myb domain
PfamPF002496.4E-65280IPR001005SANT/Myb domain
CDDcd001672.34E-55483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MGHFGQHIYG SEVNPSSSSQ LRFSSFNKAA EQRETETEMR RTPRCSKDGL NRGPWTAVED  60
KLLTDYISIH GEGKWSNVVK NTGLFYSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013821.14e-26myb-related protein 340-like
TrEMBLB9RB396e-60B9RB39_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002511414.19e-61(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2200323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.15e-12myb domain protein 41