PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30147.m014054

Common Name

RCOM_1513320

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 164aa MW: 18971.7 Da PI: 9.1503

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30147.m014054	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	24.7	6.5e-08	21	45	3	27
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqp 27 a+C ++ rkC+++C+lapyfp +q+ 30147.m014054 21 ASCEYQARKCSSGCPLAPYFPPDQE 45 89*******************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-5	21	45	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSGLIYQKNA ELILGLRQAY ASCEYQARKC SSGCPLAPYF PPDQEIARNL IIWCRKESRN 60 SWRTSKARTN TFFNIINLPG KYRRKVSCSW ACFICQLHYQ IRQAEKELHS HTTSGYTSGP 120 CQVSLKSWEE IFLLVSKVDG KSWEETLRDR TQCTNKAYCP GRDN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30147.m014054

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9R928	1e-119	B9R928_RICCO; Uncharacterized protein
STRING	XP_002511503.1	1e-120	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-06	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	30147.m014054