PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014145
Common NameLOC8258334, RCOM_1498370
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 243aa    MW: 27601 Da    PI: 6.3965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014145genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-1070118555
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +e+Er+RR+++ +  + Lr+llP  +    ++K s ++   +A +YIk+L+
  30147.m014145  70 RKEIERQRRQQMSTLHASLRSLLPLeS---LKGKRSMSDHINEAAKYIKHLR 118
                    589**********************66...9*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.86E-964122No hitNo description
PROSITE profilePS5088812.4365117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1266133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-970133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-771117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003471123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFPYDQNNRF SPQAIFFYPH QDIIQDNQIL GEKSVDSSNL DQEGQIPIIL SNSNTNNDVN  60
LACVEKKIIR KEIERQRRQQ MSTLHASLRS LLPLESLKGK RSMSDHINEA AKYIKHLRSN  120
VQELSAKRDK LKNLSNSSSY EHGINYESAH DTFMNSIVSV RSYLGGVEIV ISCDSGDENF  180
LLSRVLEAVI EEGFDVVSCI STKSDQRIYN TIQCQANHNT YVDLAALQQK LNDVILSTQF  240
ISK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014527.11e-176LOW QUALITY PROTEIN: transcription factor bHLH36
TrEMBLB9R9K31e-178B9R9K3_RICCO; DNA binding protein, putative
STRINGXP_002510878.11e-179(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.16e-33bHLH family protein