PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014146
Common NameRCOM_1498380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 161aa    MW: 18234 Da    PI: 9.5902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014146genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000293381855
                   HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   + +  Lr llP       ++K   ++   ++v+YI++Lq
  30147.m014146  3 TLYTSLRNLLPLdY---IKGKRAISDHIHETVKYIRELQ 38
                   66889*******66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.518137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.09E-5351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MATLYTSLRN LLPLDYIKGK RAISDHIHET VKYIRELQKK IKQLSVQRDE SKELSNLRHG  60
TSSEKLNSSS TPTNYVMVRS CFIGVEVVIN CAFGDQVFHL SRVLQLLIEE GLNVVSYTSA  120
KVNERVINTI QSKVRYMTYI DISELQRSLI AAIPFSAPAN S
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510879.31e-114transcription factor bHLH118
TrEMBLB9R9K41e-114B9R9K4_RICCO; DNA binding protein, putative
STRINGXP_002510879.11e-115(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-33bHLH family protein