PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014147
Common NameRCOM_1498390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 196aa    MW: 21946.1 Da    PI: 9.3039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014147genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-122476155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   ++++h  +Er+RR+++ +  + Lr+llP       ++K s ++   +Av+YIk+L+
  30147.m014147 24 KKMMHRDIERQRRQEMATLHASLRSLLPLeY---IKGKRSISDHMNEAVNYIKHLR 76
                   6899*************************77...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-142295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.8332375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-82380No hitNo description
PfamPF000102.1E-92475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-92594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSADNNNKND HGINTPSLIT NDKKKMMHRD IERQRRQEMA TLHASLRSLL PLEYIKGKRS  60
ISDHMNEAVN YIKHLRKRIE ELDTKRDELK QQMNIRDIPS GSSGGSSGDC SPSSGVLIRP  120
CLGGIEISFS SNLREKGQGF TLSRVLQVLL EAEISVVNCV STNVNKRVLH TIQTEVKDPA  180
CLNLSELQQK LTSLVP
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014506.11e-141transcription factor bHLH36
TrEMBLB9R9K51e-141B9R9K5_RICCO; DNA binding protein, putative
STRINGXP_002510880.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-45bHLH family protein