PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014198
Common NameRCOM_1499980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 188aa    MW: 21603.7 Da    PI: 4.7307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014198genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-1012352347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                      W++Ia++++ gRt++++k++w+++
    30147.m014198 12 KWSKIAARLP-GRTDNEIKNHWNTH 35
                     6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.921140IPR017930Myb domain
SuperFamilySSF466891.72E-9745IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-131151IPR009057Homeodomain-like
PfamPF002494.1E-81235IPR001005SANT/Myb domain
CDDcd001676.00E-71236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEYFGGSDIA TKWSKIAARL PGRTDNEIKN HWNTHIKKKL IKMGIDPVTH EPLNKQVNPQ  60
ELVPYDHHSS NNSHDHRDQK LPKTNNCDHS SSSDNSSTPP ENCSIDECRS TNPNSDDDPL  120
MNYILSETFL EDSTWNFPMT REEYCEFGKS SSSEGNSPWL LDLKNIEDDH HFGFLDCFSE  180
MDLKMLDL
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347331e-38KM034733.1 Jatropha curcas clone JcMYB113 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581058.11e-122protein ODORANT1
TrEMBLB9R9Q41e-137B9R9Q4_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002510929.11e-138(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-23myb domain protein 85