PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014211
Common NameRCOM_1500210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 389aa    MW: 44856.7 Da    PI: 6.7958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014211genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-55321611129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  30147.m014211  32 VPPGFRFHPTDEELVDYYLRKKVNSRRVDL-DVIKDVDLYKIEPWDLQElcRIGTdDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIY 126
                    69***************************9.99**************954555552555************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  30147.m014211 127 S-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 161
                    *.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6129181IPR003441NAC domain
PROSITE profilePS5100560.17932181IPR003441NAC domain
PfamPF023657.2E-2933160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MNALSNVIDL VHVTKQMDRR PEQESMNSFS HVPPGFRFHP TDEELVDYYL RKKVNSRRVD  60
LDVIKDVDLY KIEPWDLQEL CRIGTDDQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG  120
RDKAIYSKHD LIGMRKTLVF YKGRAPNGQK SDWIMHEYRL ETDENGTPQE EGWVVCRVFK  180
KRITTMRKVN EHESSSWYDD QVSFMQEEDS PKQNSHPDLA YHVSYTCKKE LGFQYQVPHD  240
HFLQLPLLQS PKLLQVAANV SCTSTAAYGL DMNQQARTPQ SSSVAQEGHL HQRREQSLHS  300
LFANNQSNNN NTEQAVDQVT DWRVLDKFVA SQLSQEDVNK ENNNYSNAAN NIFHASDQAN  360
QLAKQSNKQE AAPGNASTST SSCQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-503118214169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014619.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-143NAC7_ARATH; NAC domain-containing protein 7
TrEMBLB9R9R70.0B9R9R7_RICCO; NAC domain-containing protein, putative
STRINGXP_002510942.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-124NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]