PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014282
Common NameLOC8258272, RCOM_1496640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 323aa    MW: 35794.9 Da    PI: 5.106
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014282genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.3e-36251152101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i
  30147.m014282  25 FLTKTYQLVDDPAIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCDI 111
                    9*****************************************************************99.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  30147.m014282 112 QRRK 115
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSPPPGEQNG DAAMVESQRS IPTPFLTKTY QLVDDPAIDD VISWNDDGST FIVWNPTVFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNDCF RRGEKRLLCD IQRRKINAQS  120
AAAGVPVVPS PQPHMHVAVA AAIPVAKLII SPASSGEEQV ISTNSSPSRL GGGPATELLD  180
ENDRLRKENV HLSKELIEMK NLCNNIFSLV SSYAGNQPPE NGGFSAVKPL DLLSVKQLSV  240
EEEEETSARL FGVAIGVKRG REGEDRENDT QLQLQQPGGG NAVKIEPVDC QNDAVNGHNH  300
DYDHDHDHDQ ESTWLRNGRV CNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252511429129Heat shock factor protein 1
5d5v_B1e-252511429129Heat shock factor protein 1
5d5v_D1e-252511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510816.10.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-89HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLB9R9E10.0B9R9E1_RICCO; Heat shock factor protein, putative
STRINGXP_002510816.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-90heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]