PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30147.m014297

Common Name

RCOM_1496800

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 216aa MW: 24023.6 Da PI: 6.2508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30147.m014297	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.3	1.9e-11	72	119	3	51
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 + +YA+ vGFsvrk+ ++sk +g +++r+++Cskeg+r++ k+ e + 30147.m014297 72 FYKYARLVGFSVRKDWVNRSKVHGLVVSRKYTCSKEGYRRKALKT-EAQ 119 458*************************************99888.332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-9	72	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRMTEVVLVM KTWMSDSKCQ ISYLNVDHDC RSSNVAHASE AQCSPSSKDD SVAEGILKVG 60 TGFESDEHAY NFYKYARLVG FSVRKDWVNR SKVHGLVVSR KYTCSKEGYR RKALKTEAQV 120 ITSSSTPANG SESESIEIFL DEREAEDQDE DRVAKIQEKA GDNRNIKEAH ELSYRQRQHP 180 SADAAFYEIN MVNSISGGPP PASDTVSKTL LASNSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30147.m014297

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9R9F6	1e-160	B9R9F6_RICCO; Uncharacterized protein
STRING	XP_002510831.1	1e-161	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	5e-09	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	30147.m014297